Chi'Kran Ships
Kracken
Clipper
Death Wing
Nirini Cruiser
New Republic Ships
Most of these don't show up until halfway through the campaign
MC-95 Super Cruiser
MC-100 Super Cruiser {roughly the size of a Sovereign class Super star destroyer}
New Republic Commando Transport
Gladiator class Heavy Fighter
Warhawk Advanced Fighter
Macross Fighter Carrier
Macross Battleship
Valkyrie Fighter
Advanced Valkyrie Fighter
Valkyrie Scout Craft
New Technologies
Knight's Sword